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1.
J Cardiovasc Magn Reson ; 25(1): 68, 2023 Nov 23.
Article in English | MEDLINE | ID: mdl-37993824

ABSTRACT

PURPOSE: To develop a partially interpretable neural network for joint suppression of banding and flow artifacts in non-phase-cycled bSSFP cine imaging. METHODS: A dual-stage neural network consisting of a voxel-identification (VI) sub-network and artifact-suppression (AS) sub-network is proposed. The VI sub-network provides identification of artifacts, which guides artifact suppression and improves interpretability. The AS sub-network reduces banding and flow artifacts. Short-axis cine images of 12 frequency offsets from 28 healthy subjects were used to train and test the dual-stage network. An additional 77 patients were retrospectively enrolled to evaluate its clinical generalizability. For healthy subjects, artifact suppression performance was analyzed by comparison with traditional phase cycling. The partial interpretability provided by the VI sub-network was analyzed via correlation analysis. Generalizability was evaluated for cine obtained with different sequence parameters and scanners. For patients, artifact suppression performance and partial interpretability of the network were qualitatively evaluated by 3 clinicians. Cardiac function before and after artifact suppression was assessed via left ventricular ejection fraction (LVEF). RESULTS: For the healthy subjects, visual inspection and quantitative analysis found a considerable reduction of banding and flow artifacts by the proposed network. Compared with traditional phase cycling, the proposed network improved flow artifact scores (4.57 ± 0.23 vs 3.40 ± 0.38, P = 0.002) and overall image quality (4.33 ± 0.22 vs 3.60 ± 0.38, P = 0.002). The VI sub-network well identified the location of banding and flow artifacts in the original movie and significantly correlated with the change of signal intensities in these regions. Changes of imaging parameters or the scanner did not cause a significant change of overall image quality relative to the baseline dataset, suggesting a good generalizability. For the patients, qualitative analysis showed a significant improvement of banding artifacts (4.01 ± 0.50 vs 2.77 ± 0.40, P < 0.001), flow artifacts (4.22 ± 0.38 vs 2.97 ± 0.57, P < 0.001), and image quality (3.91 ± 0.45 vs 2.60 ± 0.43, P < 0.001) relative to the original cine. The artifact suppression slightly reduced the LVEF (mean bias = -1.25%, P = 0.01). CONCLUSIONS: The dual-stage network simultaneously reduces banding and flow artifacts in bSSFP cine imaging with a partial interpretability, sparing the need for sequence modification. The method can be easily deployed in a clinical setting to identify artifacts and improve cine image quality.


Subject(s)
Artifacts , Magnetic Resonance Imaging , Humans , Magnetic Resonance Imaging/methods , Image Enhancement/methods , Retrospective Studies , Stroke Volume , Image Interpretation, Computer-Assisted/methods , Algorithms , Predictive Value of Tests , Reproducibility of Results , Ventricular Function, Left , Neural Networks, Computer , Magnetic Resonance Imaging, Cine
2.
Eur J Clin Pharmacol ; 79(10): 1321-1332, 2023 Oct.
Article in English | MEDLINE | ID: mdl-37507595

ABSTRACT

OBJECTIVES: This study aimed to quantitatively compare the efficacy and safety of long-acting ß2-agonist (LABA)/long-acting muscarinic antagonist (LAMA) and LABA/inhaled corticosteroid (ICS) fixed-dose combinations (FDCs) in preventing moderate or severe chronic obstructive pulmonary disease (COPD) exacerbations. METHODS: A literature search was performed using public databases. The time course characteristics of the probability of a moderate or severe exacerbation in stable COPD patients treated with LABA/LAMA and LABA/ICS FDCs were described by the parametric survival function. A random-effects model in a single-arm meta-analysis was used to analyze the incidence of serious adverse events (SAEs) and pneumonia. RESULTS: Twenty studies including 23,955 participants were included. The proportion of participants with a history of COPD exacerbation (%) in the previous year and the postbronchodilator forced expiratory volume in the first second (FEV1) (%predicted) were important factors affecting drug efficacy. After adjusting the above factors to median levels of 100% and 45.5%, respectively, the moderate or severe exacerbation rates at 52 weeks for olodaterol/tiotropium, formoterol/budesonide, indacaterol/glycopyrronium, formoterol/glycopyrronium, vilanterol/fluticasone, salmeterol/fluticasone, and vilanterol/umeclidinium were 38.3%, 41.0%, 42.6%, 47.0%, 47.5%, 47.9%, and 53.0%, respectively. In terms of safety, significant differences were observed among drugs containing different LABA/LAMA FDCs. CONCLUSIONS: This study showed that not all LABA/LAMA FDCs were superior to LABA/ICS FDCs in safety and in preventing moderate or severe exacerbations in patients with stable COPD, providing important quantitative information for COPD-related guidelines.


Subject(s)
Muscarinic Antagonists , Pulmonary Disease, Chronic Obstructive , Humans , Administration, Inhalation , Adrenal Cortex Hormones/therapeutic use , Adrenergic beta-2 Receptor Agonists/therapeutic use , Bronchodilator Agents/therapeutic use , Drug Combinations , Fluticasone/therapeutic use , Formoterol Fumarate/therapeutic use , Glycopyrrolate/therapeutic use , Muscarinic Antagonists/therapeutic use , Pulmonary Disease, Chronic Obstructive/drug therapy
3.
BMC Infect Dis ; 22(1): 343, 2022 Apr 06.
Article in English | MEDLINE | ID: mdl-35382755

ABSTRACT

BACKGROUND: Pneumonia is a common complication of influenza and closely related to mortality in influenza patients. The present study examines cytokines as predictors of the prognosis of influenza-associated pneumonia. METHODS: This study included 101 inpatients with influenza (64 pneumonia and 37 non-pneumonia patients). 48 cytokines were detected in the serum samples of the patients and the clinical characteristics were analyzed. The correlation between them was analyzed to identify predictive biomarkers for the prognosis of influenza-associated pneumonia. RESULTS: Seventeen patients had poor prognosis and developed pneumonia. Among patients with influenza-associated pneumonia, the levels of 8 cytokines were significantly higher in those who had a poor prognosis: interleukin-6 (IL-6), interferon-γ (IFN-γ), granulocyte colony-stimulating factor (G-CSF), monocyte colony-stimulating factor (M-CSF), monocyte chemoattractant protein-1 (MCP-1), monocyte chemoattractant protein-3, Interleukin-2 receptor subunit alpha and Hepatocyte growth factor. Correlation analysis showed that the IL-6, G-CSF, M-CSF, IFN-γ, and MCP-1 levels had positive correlations with the severity of pneumonia. IL-6 and G-CSF showed a strong and positive correlation with poor prognosis in influenza-associated pneumonia patients. The combined effect of the two cytokines resulted in the largest area (0.926) under the receiver-operating characteristic curve. CONCLUSION: The results indicate that the probability of poor prognosis in influenza patients with pneumonia is significantly increased. IL-6, G-CSF, M-CSF, IFN-γ, and MCP-1 levels had a positive correlation with the severity of pneumonia. Importantly, IL-6 and G-CSF were identified as significant predictors of the severity of influenza-associated pneumonia.


Subject(s)
Granulocyte Colony-Stimulating Factor , Influenza, Human , Interleukin-6 , Pneumonia, Viral , Cytokines/blood , Granulocyte Colony-Stimulating Factor/blood , Humans , Influenza, Human/complications , Influenza, Human/immunology , Interleukin-6/blood , Pneumonia, Viral/diagnosis , Pneumonia, Viral/immunology , Prognosis
4.
Ther Adv Respir Dis ; 16: 17534666211066068, 2022.
Article in English | MEDLINE | ID: mdl-35001708

ABSTRACT

OBJECTIVE: This study aimed to quantitatively compare the efficacy and safety of long-acting ß2-agonist (LABA)/long-acting muscarinic antagonist (LAMA) fixed-dose combinations (FDCs) for the treatment of stable chronic obstructive pulmonary disease (COPD), especially in terms of their loss of efficacy in lung function. METHODS: Randomized controlled clinical trials of LABA/LAMA FDCs for the treatment of stable COPD were comprehensively searched for in public databases. Pharmacodynamic models were established to describe the time course of the primary outcome [trough forced expiratory volume in the first second (FEV1)]. Secondary outcomes [COPD exacerbations, St. George's Respiratory Questionnaire (SGRQ), Transition Dyspnoea Index (TDI), and rescue medication use] and safety outcomes [mortality, serious adverse events (SAEs), and withdrawals due to adverse events (AEs)] were also compared via a meta-analysis. RESULTS: A total of 22 studies involving 16,486 participants were included in this study. The results showed that in terms of primary outcome (change from baseline in trough FEV1), the efficacy of vilanterol/umeclidinium was the highest, while the efficacy of formoterol/aclidinium was the lowest, with a maximum effect value (Emax) of 0.185 L [95% confidence interval (CI): 0.173-0.197 L] and 0.119 L (95% CI: 0.103-0.135 L), respectively. The efficacy of other drugs, such as formoterol/glycopyrronium, indacaterol/glycopyrronium, and olodaterol/tiotropium, were comparable, and their Emax values were 0.150-0.177 L. Except for vilanterol/umeclidinium, the other four LABA/LAMA FDCs showed a certain degree of loss of efficacy. Compared with the efficacy at 2 days, the trough FEV1 (L) relative to baseline at 24 weeks decreased by 0.029-0.041 L. In terms of secondary outcomes, the efficacy of different LABA/LAMA FDCs was similar in TDI and rescue medication use. However, formoterol/aclidinium was better in preventing the COPD exacerbations, while vilanterol/umeclidinium was the best in terms of SGRQ. In addition, different LABA/LAMA FDCs and placebo had similar safety outcomes. CONCLUSION: The present findings may provide necessary quantitative information for COPD medication guidelines.


Subject(s)
Muscarinic Antagonists , Pulmonary Disease, Chronic Obstructive , Adrenergic beta-2 Receptor Agonists , Bronchodilator Agents , Drug Combinations , Forced Expiratory Volume , Formoterol Fumarate , Glycopyrrolate , Humans , Pulmonary Disease, Chronic Obstructive/diagnosis , Pulmonary Disease, Chronic Obstructive/drug therapy , Treatment Outcome
5.
Exp Ther Med ; 21(4): 351, 2021 Apr.
Article in English | MEDLINE | ID: mdl-33732324

ABSTRACT

Liver fibrosis (LF) is a continuous wound healing process caused by numerous chronic hepatic diseases and poses a major threat to human health. Activation of hepatic stellate cells (HSCs) is a critical event in the development of hepatic fibrosis. Long non-coding RNAs (lncRNAs) that are involved in HSC activation, participate in the development of LF and are likely to be therapeutic targets for LF. In the present review, the cellular signaling pathways of LF with respect to HSCs were discussed. In particular, this present review highlighted the current knowledge on the role of lncRNAs in activating or inhibiting LF, revealing lncRNAs that are likely to be biomarkers or therapeutic targets for LF. Additional studies should be performed to elucidate the potential of lncRNAs in the diagnosis and prognosis of LF and to provide novel therapeutic approaches for the reversion of LF.

6.
Environ Toxicol Chem ; 40(1): 79-87, 2021 01.
Article in English | MEDLINE | ID: mdl-33090545

ABSTRACT

Equilibrium sampling based on silicone polydimethylsiloxane (PDMS) has been used to determine the concentrations of freely dissolved hydrophobic organic compounds (HOCs) and assess the thermodynamic potentials for bioaccumulation of these compounds in the aquatic environment. This allows the use of PDMS-based sampling techniques in assisting conventional sampling and extraction methods for the determination of the concentrations of HOCs in aquaculture products. The present study is an ex situ demonstration of how well PDMS can inform the tissue residues and dietary risks of legacy or current-use organic chemicals in aquaculture species from farm ponds in eastern China. For legacy contaminants such as polybrominated diphenyl ethers (PBDEs, n = 10), good agreement between the predicted concentrations based on PDMS and the measured lipid-normalized concentrations was observed for 60% of the studied biota, including both pelagic and benthic species. For pesticides currently used, such as pyrethroid (PE) (n = 4) and organophosphate pesticides (OPPs, n = 7), the measured tissue residues were consistently higher than those predicted by PDMS, possibly caused by the continuous input from the surroundings. For the organochlorine pesticides (OCPs, n = 5), the only detected chemical was also underestimated. Adjusted by ingestion rates of aquaculture products and toxicology data, the target hazard quotients of these chemicals predicted from PDMS were generally comparable to those derived from measured concentrations in tissue because of the predominance of PBDEs. Overall, PDMS-based equilibrium sampling offered an alternative approach for the prediction of tissue residues and dietary risks of PBDEs. Moreover, it should be applied with caution for PEs, OPPs, and OCPs. Improving the application of PDMS for these chemicals in farm ponds warrants future study. Environ Toxicol Chem 2021;40:79-87. © 2020 SETAC.


Subject(s)
Hydrocarbons, Chlorinated , Polychlorinated Biphenyls , Water Pollutants, Chemical , Aquaculture , Environmental Monitoring , Hydrocarbons, Chlorinated/analysis , Organic Chemicals/toxicity , Water Pollutants, Chemical/analysis
7.
Infect Drug Resist ; 13: 4547-4558, 2020.
Article in English | MEDLINE | ID: mdl-33376361

ABSTRACT

BACKGROUND: Antibiotics play an important role in the treatment of infectious diseases. However, the overuse of antibiotics increases the spread of drug-resistant bacteria and causes dysbiosis of the intestinal microbiota. Few studies have addressed the longitudinal effects of antibiotics on the microbiome and host immunity. MATERIALS AND METHODS: In this study, the short-term effect of fluoroquinolone (levofloxacin) and ß-lactam antibiotics (meropenem, cefoperazone/sulbactam, and aztreonam) on the gut microbiota of mice was evaluated by 16S rRNA gene sequencing. The susceptibility of Bifidobacterium longum, Lactobacillus lactis, Enterococcus faecium, and Clostridium butyricum to these antimicrobial agents was assessed using the disc diffusion method. RESULTS: Our results showed that 4-day antibiotic exposure significantly reduced the alpha and beta diversity of gut bacteria and increased serum inflammatory cytokines, and these changes persisted long after antibiotic withdrawal and did not return to pre-treatment levels. Nonetheless, the bacterial community composition tended to return to pre-treatment levels after discontinuing treatment. The tested probiotic strains were resistant to aztreonam but were sensitive to meropenem and cefoperazone/sulbactam. CONCLUSION: Short-term antibiotic treatment led to significant changes in the intestinal flora with a tendency to recover. The antibiotics had different effects on the intestinal microbial community and probiotic strains. This study provides guidance for the concomitant use of probiotics and antibiotics, and the results emphasize the importance of using broad-spectrum antibiotics responsibly to prevent the long-term disruption of the native microbiota.

8.
Clin Infect Dis ; 71(10): 2669-2678, 2020 12 17.
Article in English | MEDLINE | ID: mdl-32497191

ABSTRACT

BACKGROUND: Coronavirus disease 2019 (COVID-19) is an emerging serious global health problem. Gastrointestinal symptoms are common in COVID-19 patients, and severe acute respiratory syndrome coronavirus 2 RNA has been detected in stool specimens. However, the relationship between the gut microbiome and disease remains to be established. METHODS: We conducted a cross-sectional study of 30 patients with COVID-19, 24 patients with influenza A(H1N1), and 30 matched healthy controls (HCs) to identify differences in the gut microbiota by 16S ribosomal RNA gene V3-V4 region sequencing. RESULTS: Compared with HCs, COVID-19 patients had significantly reduced bacterial diversity; a significantly higher relative abundance of opportunistic pathogens, such as Streptococcus, Rothia, Veillonella, and Actinomyces; and a lower relative abundance of beneficial symbionts. Five biomarkers showed high accuracy for distinguishing COVID-19 patients from HCs with an area under the curve (AUC) up to 0.89. Patients with H1N1 displayed lower diversity and different overall microbial composition compared with COVID-19 patients. Seven biomarkers were selected to distinguish the 2 cohorts (AUC = 0.94). CONCLUSIONS: The gut microbial signature of patients with COVID-19 was different from that of H1N1 patients and HCs. Our study suggests the potential value of the gut microbiota as a diagnostic biomarker and therapeutic target for COVID-19, but further validation is needed.


Subject(s)
COVID-19 , Gastrointestinal Microbiome , Influenza A Virus, H1N1 Subtype , Influenza, Human , Cross-Sectional Studies , Dysbiosis , Feces , Humans , Influenza A Virus, H1N1 Subtype/genetics , RNA, Ribosomal, 16S/genetics , SARS-CoV-2
9.
Nat Commun ; 11(1): 308, 2020 Jan 16.
Article in English | MEDLINE | ID: mdl-31949133

ABSTRACT

Thiacalix[4]arenes as a family of promising ligands have been widely used to construct polynuclear metal clusters, but scarcely employed in silver nanoclusters. Herein, an anion-templated Ag88 nanocluster (SD/Ag88a) built from p-tert-butylthiacalix[4]arene (H4TC4A) is reported. Single-crystal X-ray diffraction reveals that C4-symmetric SD/Ag88a resembles a metal-organic super calix comprised of eight TC4A4- as walls and 88 silver atoms as base, which can be deconstructed to eight [CrO4@Ag11(TC4A)(EtS)4(OAc)] secondary building units arranged in an annulus encircling a CrO42- in the center. Local and global anion template effects from chromates are individually manifested in SD/Ag88a. The solution stability and hierarchical assembly mechanism of SD/Ag88a are studied by using electrospray mass spectrometry. The Ag88 nanocluster represents the highest nuclearity metal cluster capped by TC4A4-. This work not only exemplify the specific macrocyclic effects of TC4A4- in the construction of silver nanocluster but also realize the shape heredity of TC4A4- to overall silver super calix.

10.
Engineering (Beijing) ; 6(10): 1178-1184, 2020 Oct.
Article in English | MEDLINE | ID: mdl-33520333

ABSTRACT

Coronavirus disease 2019 (COVID-19) is a highly contagious infectious disease. Similar to H7N9 infection, pneumonia and cytokine storm are typical clinical manifestations of COVID-19. Our previous studies found that H7N9 patients had intestinal dysbiosis. However, the relationship between the gut microbiome and COVID-19 has not been determined. This study recruited a cohort of 57 patients with either general (n = 20), severe (n = 19), or critical (n = 18) disease. The objective of this study was to investigate changes in the abundance of ten predominant intestinal bacterial groups in COVID-19 patients using quantitative polymerase chain reaction (q-PCR), and to establish a correlation between these bacterial groups and clinical indicators of pneumonia in these patients. The results indicated that dysbiosis occurred in COVID-19 patients and changes in the gut microbial community were associated with disease severity and hematological parameters. The abundance of butyrate-producing bacteria, such as Faecalibacterium prausnitzii, Clostridium butyricum, Clostridium leptum, and Eubacterium rectale, decreased significantly, and this shift in bacterial community may help discriminate critical patients from general and severe patients. Moreover, the number of common opportunistic pathogens Enterococcus (Ec) and Enterobacteriaceae (E) increased, especially in critically ill patients with poor prognosis. The results suggest that these bacterial groups can serve as diagnostic biomarkers for COVID-19, and that the Ec/E ratio can be used to predict death in critically ill patients.

11.
Med Sci Monit ; 25: 6998-7004, 2019 Sep 18.
Article in English | MEDLINE | ID: mdl-31530794

ABSTRACT

BACKGROUND This study was conducted to investigate the relationship between trough concentrations of serum entecavir and the virological response of patients with chronic type B hepatitis (CHB). MATERIAL AND METHODS A total of 59 CHB patients who had been receiving antiviral therapy with entecavir for >3 months were included in this study. Serum entecavir concentrations, HBV DNA levels, and other biochemical indicators were determined after drug treatments. RESULTS The serum entecavir concentrations in the good response and poor response groups were 0.58±0.38 and 0.43±0.15 ng/mL, respectively. The antiviral efficacy was 52.38%, 65.63%, and 100% in low, middle, and high entecavir groups, respectively. The baseline HBV DNA level among the patients with poor response was significantly higher than in the group with good response. Among the 14 patients with a high viral load, 5 patients showed a good response and had a higher entecavir concentration than the other 9 patients with poor response. Entecavir in patients with cirrhosis was higher than in those without cirrhosis (0.63±0.45 ng/mL vs. 0.46±0.16 ng/mL), and the virological response rate in patients with cirrhosis was higher than in those without cirrhosis (83.33 vs. 51.43%). Cirrhosis progression was reversed in 3 patients with high serum entecavir concentration. CONCLUSIONS Serum entecavir concentrations vary among individuals, and higher serum entecavir concentration is correlated with more efficient viral clearance. Therefore, for patients with poor response, high doses may be beneficial for viral clearance.


Subject(s)
Guanine/analogs & derivatives , Hepatitis B, Chronic/blood , Hepatitis B, Chronic/virology , Adult , DNA, Viral/blood , Female , Guanine/blood , Hepatitis B, Chronic/complications , Humans , Liver Cirrhosis/blood , Liver Cirrhosis/complications , Male , Middle Aged , Viral Load
12.
Mar Genomics ; 46: 1-7, 2019 Aug.
Article in English | MEDLINE | ID: mdl-30852186

ABSTRACT

Albinism is a genetically inherited condition that is caused by a series of genetic abnormalities leading to a reduction in melanin production. Russian sturgeon is one of the most valuable freshwater fish species worldwide, and albino individuals have been found in fish farms. Due to its complicated genome and scarce genome-wide genetic resources, the underlying molecular basis of albinism in Russian sturgeon is unknown. In the present study, we first generated transcriptome profile of Acipenser gueldenstaedtii using pooled tissues, which provided reliable reference sequences for future molecular genetic studies. A total of 369,441 contigs were assembled, corresponding to 32,965 unique genes. A comparative analysis of the transcripts from the skin of albino and wildtype individuals was conducted afterwards. A total of 785 unique genes were differentially expressed, including the upregulation of 385 genes and the downregulation of 400 genes in albino individuals. The expression pattern of 16 selected differentially expressed genes was validated using qRT-PCR. Additional annotation, GO enrichment analysis and gene pathway analysis indicated that the melanogenesis pathway may be interrupted in albinism. Eight potential causative genes that were highly likely to be responsible for sturgeon albinism were identified, including Dct, Tyrp1b, Slc45a2, Ctns, Pmela, Pmelb, Cd63, and Bloc1s3, which were found to be significantly down-regulated in albino Russian sturgeon. Moreover, a sliding window analysis of the ratio of nonsynonymous to synonymous nucleotide substitution rates (Ka/Ks) ratios indicated that seven out of the eight genes underwent positive selection during evolution. Our results provide a valuable basis for understanding the molecular mechanism of albinism in fish species and will facilitate future genetic selection and breeding of sturgeon with market-favored traits in aquaculture.


Subject(s)
Albinism/veterinary , Fishes/genetics , Transcriptome , Albinism/genetics , Animals , Breeding , Gene Expression Profiling , Gene Expression Regulation , Genomics
13.
Article in English | MEDLINE | ID: mdl-28888727

ABSTRACT

The Toll-like receptor (TLR) gene family is a class of conserved pattern recognition receptors, which play an essential role in innate immunity providing efficient defense against invading microbial pathogens. Although TLRs have been extensively characterized in both invertebrates and vertebrates, a comprehensive analysis of TLRs in common carp is lacking. In the present study, we have conducted the first genome-wide systematic analysis of common carp (Cyprinus carpio) TLR genes. A set of 27 common carp TLR genes were identified and characterized. Sequence similarity analysis, functional domain prediction and phylogenetic analysis supported their annotation and orthologies. By examining the gene copy number of TLR genes across several vertebrates, gene duplications and losses were observed. The expression patterns of TLR genes were examined during early developmental stages and in various healthy tissues, and the results showed that TLR genes were ubiquitously expressed, indicating a likely role in maintaining homeostasis. Moreover, the differential expression of TLRs was examined after Aeromons hydrophila infection, and showed that most TLR genes were induced, with diverse patterns. TLR1, TLR4-2, TLR4-3, TLR22-2, TLR22-3 were significantly up-regulated at minimum one timepoint, whereas TLR2-1, TLR4-1, TLR7-1 and TLR7-2 were significantly down-regulated. Our results suggested that TLR genes play critical roles in the common carp immune response. Collectively, our findings provide fundamental genomic resources for future studies on fish disease management and disease-resistance selective breeding strategy development.


Subject(s)
Aeromonas hydrophila/immunology , Carps/genetics , Fish Diseases/immunology , Gram-Negative Bacterial Infections/immunology , Toll-Like Receptors/genetics , Toll-Like Receptors/immunology , Animals , Carps/immunology , Gene Dosage , Genome/genetics , Genome/immunology , Gram-Negative Bacterial Infections/veterinary , Organ Specificity , Phylogeny , Toll-Like Receptors/classification
15.
Sci Rep ; 6: 26693, 2016 05 26.
Article in English | MEDLINE | ID: mdl-27225429

ABSTRACT

High density genetic linkage maps are essential for QTL fine mapping, comparative genomics and high quality genome sequence assembly. In this study, we constructed a high-density and high-resolution genetic linkage map with 28,194 SNP markers on 14,146 distinct loci for common carp based on high-throughput genotyping with the carp 250 K single nucleotide polymorphism (SNP) array in a mapping family. The genetic length of the consensus map was 10,595.94 cM with an average locus interval of 0.75 cM and an average marker interval of 0.38 cM. Comparative genomic analysis revealed high level of conserved syntenies between common carp and the closely related model species zebrafish and medaka. The genome scaffolds were anchored to the high-density linkage map, spanning 1,357 Mb of common carp reference genome. QTL mapping and association analysis identified 22 QTLs for growth-related traits and 7 QTLs for sex dimorphism. Candidate genes underlying growth-related traits were identified, including important regulators such as KISS2, IGF1, SMTLB, NPFFR1 and CPE. Candidate genes associated with sex dimorphism were also identified including 3KSR and DMRT2b. The high-density and high-resolution genetic linkage map provides an important tool for QTL fine mapping and positional cloning of economically important traits, and improving common carp genome assembly.


Subject(s)
Carps/genetics , Chromosome Mapping , Genetic Linkage , Polymorphism, Single Nucleotide , Quantitative Trait Loci , Animals , Zebrafish/genetics
16.
Environ Sci Pollut Res Int ; 22(15): 11658-68, 2015 Aug.
Article in English | MEDLINE | ID: mdl-25850747

ABSTRACT

An intensive investigation was conducted to study the spatial distribution and temporal variety trend of mercury and arsenic in plant tissue and soil profile in the eastern of the Tibet Plateau and to explore the possible sources of these two elements. At present, rare information is available on mercury (Hg) and arsenic (As) of timberline forests in the Tibet Plateau. Here, we present preliminary results on these two elements in leaves, twigs, root, litterfall, and soil. Geostatistical analyst of the ArcGIS 10.0 was used to determine the trait of spatial distribution of these two elements. Total arsenic (TAs) mean concentrations in the leaves, twigs, root, litterfall, and A- and C-layer soil ranged from 0.12 mg kg(-1) (n = 60), 0.35 mg kg(-1) (n = 60), 0.48 mg kg(-1) (n = 42), 1.52 mg kg(-1) (n = 84), 16.51 mg kg(-1) (n = 69), and 26.72 mg kg(-1) (n = 69), respectively. Total Hg (THg) mean concentrations in leaves, twigs, root, litterfall, and A- and C-layer soil were 0.0121 mg kg(-1) (n = 60), 0.0078 mg kg(-1) (n = 60), 0.0171 mg kg(-1) (n = 42), 0.0479 mg kg(-1) (n = 84), 0.0852 mg kg(-1) (n = 75), and 0.0251 mg kg(-1) (n = 75), respectively. In general, litterfall trended to accumulate high concentrations of Hg and As. Mercury in the timberline forest showed an increasing trend, whereas arsenic concentrations showed a decreasing trend in A-layer soil and an increasing trend in C-layer soil due to the easy mobile ability of As. Southwest and southeast monsoon could be the influencing factors, and Hg emission from India and China was the possible source of this study area through using a HYSPLIT (Hybrid Single-Particle Lagrangian Integrated Trajectory) model. It is believed that these observations may offer scientists and policymakers additional understanding of Hg and As concentrations in the remote timberline area, eastern of the Tibet Plateau.


Subject(s)
Arsenic/analysis , Environmental Monitoring , Forests , Mercury/analysis , Soil/chemistry , Spatio-Temporal Analysis , Tracheophyta , Plant Leaves/chemistry , Plant Roots/chemistry , Soil Pollutants/analysis , Tibet
17.
Med Sci Monit ; 20: 782-8, 2014 May 13.
Article in English | MEDLINE | ID: mdl-24819043

ABSTRACT

BACKGROUND: This study aimed to evaluate the safety of tooth extraction in elderly patients with cardiovascular diseases. MATERIAL AND METHODS: A total of 13 527 patients underwent tooth extraction at the Affiliated Ninth People's Hospital of Shanghai Jiaotong University. Age, sex, and diseases were analyzed. Cardiac monitoring during tooth extraction was performed in 7077 elderly patients with hypertension and other chronic diseases, and the influence of various factors on safety of tooth extraction was evaluated. Additionally, 89 patients with primary hypertension were recruited, and electrocardiogram was monitored with a general monitor or a Holter monitor, and the detection rate of cardiovascular events was compared between the 2 groups. RESULTS: The elderly accounted from 75.3%, and patients aged 70-79 years had highest proportion. The most frequent comorbidities were hypertension, coronary heart disease, arrhythmia, cerebrovascular accident, and diabetes. In analysis of factors influencing the safety of tooth extraction in the elderly, a significant difference was noted in systolic blood pressure at different time points. In addition, change in heart rate was different between males and females. Detection rate of cardiovascular events by use of a Holter monitor was significantly higher than with a general monitor. CONCLUSIONS: Hypertension was the most common comorbidity in elderly patients undergoing tooth extraction, followed by coronary heart disease and arrhythmia. Advanced age and increased comorbidity may increase the risk of complications. Risk score can be used to rapidly determine risk for complications during tooth extraction. The Holter monitor is superior to the general monitor in identifying cardiovascular events in high-risk elderly patients undergoing tooth extraction, and can be used in this population.


Subject(s)
Cardiovascular Diseases/complications , Tooth Extraction/adverse effects , Adolescent , Adult , Aged , Aged, 80 and over , Blood Pressure/physiology , Cardiovascular Diseases/diagnostic imaging , Cardiovascular Diseases/physiopathology , Chronic Disease , Comorbidity , Demography , Electrocardiography, Ambulatory , Female , Heart Rate/physiology , Humans , Male , Middle Aged , Supine Position , Time Factors , Ultrasonography , Young Adult
18.
Ecotoxicology ; 23(6): 1086-98, 2014 Aug.
Article in English | MEDLINE | ID: mdl-24817526

ABSTRACT

Concentrations of 14 heavy metals (Ag, As, Cd, Co, Cr, Cu, Hg, Mo, Ni, Pb, Sb, Tl, V, and Zn) in needles, twigs, bark and xylem of spruce and fir collected at the timberline of eight sites along the Hengduan Mountains, eastern Tibetan Plateau, are reported. Twigs had the highest concentration for most of elements, while xylem had the lowest concentration. The connections between elements in twigs were much richer than other organ/tissues. Pb, Ni, As, Sb, Co, Cd, Hg, Cr and Tl which are partly through anthropogenic sources and brought in by monsoon, have been accumulated in twigs and needles by wet or dry deposition in south and east sites where are within or near pollutant sources. Under moderate pollution situation, vegetation are able to adjust the nutrient element (Cu and Zn) cycle rate, thus maintain a stable concentration level. Seldom V, Ag, and Mo are from external anthropogenic sources. Needles and twigs can be used as biomonitors for ecosystem environment when needles can simply distinguish the origin of elements and twigs are more sensitive to extra heavy metal input.


Subject(s)
Abies/metabolism , Environmental Monitoring , Environmental Pollutants/analysis , Metals, Heavy/analysis , Picea/metabolism , Environmental Pollutants/metabolism , Metals, Heavy/metabolism , Tibet
19.
Environ Sci Process Impacts ; 15(10): 1930-7, 2013 Oct.
Article in English | MEDLINE | ID: mdl-24056779

ABSTRACT

In order to study the regional distribution, trait and possible source of chromium in the eastern Tibetan Plateau, we collected samples of xylem, bark, leaves and twigs in two parallel northwest-southeast belt transects (TA and TB) from the Hengduan Mountains. According to the Cr mean concentration, organ/tissue was split into two groups: the high-level organ/tissue (twigs: 1.476 mg kg(-1)) and the low-level organ/tissue (bark: 0.413 mg kg(-1), leaves: 0.340 mg kg(-1) and xylem: 0.194 mg kg(-1)). The mean Cr concentrations of twigs and leaves in TB samples were higher than those in the TA samples, and the mean Cr concentration in both sites gradually reduced from southeast to northwest. Both the southeasterly and southwesterly monsoons could be significant, influential factors in this connection. The top three mean Cr concentrations were S7, S1 and S8, which were closer to the developed city. Mean Cr concentrations in S3, S4 and S5, (remote, high mountains) were relatively low. The high mountains acting as a barrier to the monsoon and the distance from the big city may play important roles in the distribution of Chromium. Furthermore, the relationship between the mean Cr concentration and precipitation, timberline trees as bio-monitors of chromium pollution in polluted areas and the possible source of Cr in the eastern Tibetan Plateau are also discussed. This study may provide reliable proof of Cr contamination processes, and so help in future to prevent further Cr pollution, and also be helpful in understanding the important function of forest ecosystems in relation to atmospheric pollution and global change. To better understand the characteristics of temporal and spatial distribution of Cr concentration, we found that tree ring, fine roots and soil samples are good choices.


Subject(s)
Chromium/analysis , Environmental Monitoring , Environmental Pollutants/analysis , Plant Components, Aerial/chemistry , Trees/chemistry , Altitude , Plant Components, Aerial/growth & development , Tibet , Trees/growth & development
20.
Zhongguo Shi Yan Xue Ye Xue Za Zhi ; 20(5): 1200-4, 2012 Oct.
Article in Chinese | MEDLINE | ID: mdl-23114148

ABSTRACT

The aim of this study was to investigate the similarities and differences of A1381T (rs216311) and -1793G/C (rs7966230) single nucleotide polymorphisms (SNP) in Chinese Yugur, Tibetan, and Han nationalities and their influence on plasma vWF concentration in order to explore the sensitivity of these 3 nationalities to vWF-related diseases. Peripheral venous blood was obtained from 322 Yugur, 399 Tibetan, and 120 Han healthy people. The DNA were then extracted. vWF gene A1381T and -1793G/C polymorphisms were analyzed by the polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and sequenced when it was necessary. The vWF:Ag level in plasma was determined by ELISA. The results showed that the genotype distribution of vWF gene at both A1381T and -1793G/C loci in Yugur, Tibetan and Han nationalities was different with statistically significance (P < 0.05). GG genotype of A1381T locus accounted for 69.9% in Yugur nationality, which was much higher than 56.6% and 53.3% in Tibetan and Han nationalities respectively(P < 0.01); AA genotype of A1381T locus expressed a low level of vWF in plasma. For the -1793G/C locus, the proportion of CG genotype in Yugur was much higher than that in Han, CC genotype expressed a high level of vWF in plasma. The plasma vWF levels with different nationalities and the polymorphism of vWF gene were significantly different. It is concluded that the polymorphisms of vWF gene at both A1381T and -1793G/C loci in Yugur, Tibetan and Han are significantly different; the polymorphism of vWF gene influences the plasma vWF level; the plasma vWF levels in Yugur and Tibetan are significantly higher than that in Han, which may be associated with the living environment and habits.


Subject(s)
Plasma/chemistry , Polymorphism, Genetic , von Willebrand Factor/genetics , von Willebrand Factor/metabolism , Adolescent , Adult , Aged , Asian People/genetics , China , Ethnicity/genetics , Female , Gene Frequency , Genotype , Humans , Male , Middle Aged , Young Adult
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